The index is now always kept up to date and it has functionality for
finding common ancestors, so let's use it! This should make merging
commits a little faster if their common ancestor is far away (which is
rare). It's probably much more important that the index-based
algorithm is more correct. Also, it returns multiple common ancestors
in the criss-cross case, which lets us do a recursive merge like git
does. I'm leaving the recursive merge for later, though.